PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 263aa    MW: 29722 Da    PI: 10.3638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1773123255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeI+dp   + k+ r++lg++ t+eeA  a+++a+ k++g
  Vang08g05040.1  73 HFRGVRRRP-WGKFAAEIWDP---KrKHGRVWLGTYETEEEAGLAYDRAAFKMRG 123
                     79*******.**********8...44469************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.61E-3072133No hitNo description
SuperFamilySSF541711.24E-2173132IPR016177DNA-binding domain
PROSITE profilePS5103223.36773131IPR001471AP2/ERF domain
PfamPF008473.4E-1373123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-3073132IPR001471AP2/ERF domain
SMARTSM003804.1E-3573137IPR001471AP2/ERF domain
PRINTSPR003675.6E-137485IPR001471AP2/ERF domain
PRINTSPR003675.6E-13113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MANDLSSGVQ SFELEHDPQI LVNVSDQETF YSSSYENPIA NPCHVNDATQ LFACKREAPV  60
APREEHAPPK WKHFRGVRRR PWGKFAAEIW DPKRKHGRVW LGTYETEEEA GLAYDRAAFK  120
MRGSKAKLNF PHLIGSHAPP ERVGVAGVSR KPNLPEACFP PLSAAEDGSQ PQGSKKRRNL  180
ADLLNSYISP KPNPSSIFLW ISYLRRELPP RPPSHTPISL PLGRRVNFTR FPRLLSSRHF  240
LLINDIFHAI RVQVCGTMFK LK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2670136268ATERF1
3gcc_A2e-2670136268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515442.11e-129PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A0L9VU721e-136A0A0L9VU72_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVQ91e-136A0A0S3SVQ9_PHAAN; Uncharacterized protein
STRINGGLYMA03G26394.13e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-33ethylene-responsive element binding factor 13